TAP PHD in Capsella grandiflora

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Protein source: Phytozome (proteins from primary transcripts)


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

PHD
Alfin-like
Homeobox
zf-TAZ
ARID
zf-MIZ
zf-CCCH
HMG_box
DDT
Myb_DNA-binding
JmjC
JmjN
SWIB

(Domain names are clickable)



List of proteins (28)

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namename additionClick button to show/hide sequence: Download sequence?
Cagra.0007s0018.1.ppacid=28903159 transcript=Cagra.0007s0018.1 locus=Cagra.0007s0018 ID=Cagra.0007s0018.1.v1.1 annot-version=v1.1
Cagra.0007s0042.1.ppacid=28903145 transcript=Cagra.0007s0042.1 locus=Cagra.0007s0042 ID=Cagra.0007s0042.1.v1.1 annot-version=v1.1
Cagra.0084s0086.1.ppacid=28895358 transcript=Cagra.0084s0086.1 locus=Cagra.0084s0086 ID=Cagra.0084s0086.1.v1.1 annot-version=v1.1
Cagra.0316s0036.1.ppacid=28915617 transcript=Cagra.0316s0036.1 locus=Cagra.0316s0036 ID=Cagra.0316s0036.1.v1.1 annot-version=v1.1
Cagra.0450s0015.1.ppacid=28913157 transcript=Cagra.0450s0015.1 locus=Cagra.0450s0015 ID=Cagra.0450s0015.1.v1.1 annot-version=v1.1
Cagra.0483s0071.1.ppacid=28900402 transcript=Cagra.0483s0071.1 locus=Cagra.0483s0071 ID=Cagra.0483s0071.1.v1.1 annot-version=v1.1
Cagra.0612s0092.1.ppacid=28917561 transcript=Cagra.0612s0092.1 locus=Cagra.0612s0092 ID=Cagra.0612s0092.1.v1.1 annot-version=v1.1
Cagra.0846s0001.1.ppacid=28905365 transcript=Cagra.0846s0001.1 locus=Cagra.0846s0001 ID=Cagra.0846s0001.1.v1.1 annot-version=v1.1
Cagra.0891s0056.1.ppacid=28912908 transcript=Cagra.0891s0056.1 locus=Cagra.0891s0056 ID=Cagra.0891s0056.1.v1.1 annot-version=v1.1
Cagra.1085s0082.1.ppacid=28900578 transcript=Cagra.1085s0082.1 locus=Cagra.1085s0082 ID=Cagra.1085s0082.1.v1.1 annot-version=v1.1
Cagra.1194s0013.1.ppacid=28912791 transcript=Cagra.1194s0013.1 locus=Cagra.1194s0013 ID=Cagra.1194s0013.1.v1.1 annot-version=v1.1
Cagra.12206s0008.1.ppacid=28911968 transcript=Cagra.12206s0008.1 locus=Cagra.12206s0008 ID=Cagra.12206s0008.1.v1.1 annot-version=v1.1
Cagra.1225s0106.1.ppacid=28904120 transcript=Cagra.1225s0106.1 locus=Cagra.1225s0106 ID=Cagra.1225s0106.1.v1.1 annot-version=v1.1
Cagra.1300s0009.1.ppacid=28895041 transcript=Cagra.1300s0009.1 locus=Cagra.1300s0009 ID=Cagra.1300s0009.1.v1.1 annot-version=v1.1
Cagra.1561s0011.1.ppacid=28907459 transcript=Cagra.1561s0011.1 locus=Cagra.1561s0011 ID=Cagra.1561s0011.1.v1.1 annot-version=v1.1
Cagra.1562s0021.1.ppacid=28904618 transcript=Cagra.1562s0021.1 locus=Cagra.1562s0021 ID=Cagra.1562s0021.1.v1.1 annot-version=v1.1
Cagra.1671s0166.1.ppacid=28913974 transcript=Cagra.1671s0166.1 locus=Cagra.1671s0166 ID=Cagra.1671s0166.1.v1.1 annot-version=v1.1
Cagra.1671s0213.1.ppacid=28914307 transcript=Cagra.1671s0213.1 locus=Cagra.1671s0213 ID=Cagra.1671s0213.1.v1.1 annot-version=v1.1
Cagra.1725s0009.1.ppacid=28896051 transcript=Cagra.1725s0009.1 locus=Cagra.1725s0009 ID=Cagra.1725s0009.1.v1.1 annot-version=v1.1
Cagra.2108s0002.1.ppacid=28912505 transcript=Cagra.2108s0002.1 locus=Cagra.2108s0002 ID=Cagra.2108s0002.1.v1.1 annot-version=v1.1
Cagra.2129s0001.1.ppacid=28914965 transcript=Cagra.2129s0001.1 locus=Cagra.2129s0001 ID=Cagra.2129s0001.1.v1.1 annot-version=v1.1
Cagra.2235s0036.1.ppacid=28907707 transcript=Cagra.2235s0036.1 locus=Cagra.2235s0036 ID=Cagra.2235s0036.1.v1.1 annot-version=v1.1
Cagra.2381s0021.1.ppacid=28900774 transcript=Cagra.2381s0021.1 locus=Cagra.2381s0021 ID=Cagra.2381s0021.1.v1.1 annot-version=v1.1
Cagra.24333s0001.1.ppacid=28907568 transcript=Cagra.24333s0001.1 locus=Cagra.24333s0001 ID=Cagra.24333s0001.1.v1.1 annot-version=v1.1
Cagra.5413s0003.1.ppacid=28896887 transcript=Cagra.5413s0003.1 locus=Cagra.5413s0003 ID=Cagra.5413s0003.1.v1.1 annot-version=v1.1
Cagra.5447s0002.1.ppacid=28909765 transcript=Cagra.5447s0002.1 locus=Cagra.5447s0002 ID=Cagra.5447s0002.1.v1.1 annot-version=v1.1
Cagra.7055s0002.1.ppacid=28902046 transcript=Cagra.7055s0002.1 locus=Cagra.7055s0002 ID=Cagra.7055s0002.1.v1.1 annot-version=v1.1
Cagra.9568s0010.1.ppacid=28906224 transcript=Cagra.9568s0010.1 locus=Cagra.9568s0010 ID=Cagra.9568s0010.1.v1.1 annot-version=v1.1
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum